PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_208AF4C7D.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 786aa    MW: 90089.2 Da    PI: 7.6998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_208AF4C7D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.74.4e-1424107190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            k+Y++YA + GFs ++ ks++  ++g + +  + Cs++g+ + +         +r++ +++C a++ +k+++d   ++++ +l+HnH+
  Traes_4BL_208AF4C7D.2  24 KYYKQYAADSGFSAVTLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHP 105
                            69***********999999887.7888***************99998.....89999**************99999************ PP

                   FAR1  89 la 90 
                            l+
  Traes_4BL_208AF4C7D.2 106 LN 107
                            96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1124107IPR004330FAR1 DNA binding domain
PfamPF105513.8E-24211304IPR018289MULE transposase domain
PROSITE profilePS509669.137498534IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5509536IPR006564Zinc finger, PMZ-type
PfamPF044343.0E-6511530IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
GGAKVDENVP RIGLRFKTYD DALKYYKQYA ADSGFSAVTL KSSYLKSGVC RRLVLGCSRS  60
GRGRANACYL SRETAKINCP ARISLKLRQD RWLHIDDAKL DHNHPLNQSS DSPMSCYKKL  120
TDAKSVENGS RLKGRRNVPI ADKEQGNFTE IGRLKFGEGD DEQIQKFFGS MQNKNPNFFY  180
LVDLDKQGRL RNLFWSDARS QAAHEYFGHD VVYFDTLYLT DKYDLPLVFF TGMNNHGHPV  240
LFGTGLLSDL SAESYTWLFR AFLSCMKGCY PDTIITEHYN AILDAVREVF SQVKHRLCLY  300
RIMRDVAENL KAHAEFKTIK RALKKVTYGS LKPPEFEADW KKVIEEHGLA GNECLSSLHE  360
HRQLWAPAYL KDKFWAGMSV SQRGESVASY YDGFVYPKTS LKQFFSKYEM ILENKYKKEL  420
QADEESSHRT PLTVTKFYME EQLAKAYTIN MFRKFQEELK ATMYCDGMPS KVDGPFVTFE  480
VKECSYMEDG KETESRTYEV YFCKEGLIVE CECGFFQFTG ILCRHALSVF KLHDMFEIPS  540
RYVLDRWKRD YKKLHALAHY PNEMLLGDTV ERHDYLSTQC RQVLNLGFIS ESRYLVALKL  600
LREAERALLD DGQPARDRQP RLLSFEADAP ENGQGLFSSQ FPEGEKNSLS TNAKHPGRPA  660
KKVAETDPDA VLRSNKEQQD FLRSSFVPTE ANMIQGTSSG SHLESPDMGV PGSIHLMEGI  720
SPNLTFGPHF GMDVSHQHQL PNQPRMMPNN FMQVQADPHV FGNQWAYNQT MQVCPHTNVY  780
PFFLAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572701.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_014756995.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5E1X30.0W5E1X3_WHEAT; Uncharacterized protein
STRINGMLOC_80133.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-121FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]